tt:indexcov

This is the indexcov summary page created with version 0.1.14-dev.
Click the ? above each plot for help describing that type of plot.

Inferred sex ?

Bin Counts ?

Pedigree File

contains inferred sex, bins counts, and PCA values used to make the above plots

tt-indexcov.ped

Coverage BED File

contains scaled coverage for every sample (each column) for each 16,384 interval in the index

tt-indexcov.bed.gz

PCA: 1 vs 2 ?

PCA: 1 vs 3 ?

Coverage Plots ?

Click each plot for an interactive view.

Acknowledgements

created with goleft indexcov (version 0.1.14-dev) in the go programming language
bam index parsing with biogo/hts
interactive plots use chartjs(2) via go-chartjs
static plots and PCA by gonum/plotand gonum/matrix

Depth Plots ?

Click each plot for an interactive view.